Duplicated Gene Pairs

Genome-wide duplication or duplication of chromosome segments can produce a large number of duplicated genes. In addition, single-gene duplication can also produce a large number of duplicated genes. Single-gene replication includes tandem duplication (TD), proximal duplication (PD) and transposed duplication (TRD), dispersed duplication (DSD). DupGen_finder software was used to identify different modes of gene duplication events and the results can be downloaded from this page.

Project	WGD	TD	PD	TRD	DSD
Dangshansuli	Pbr.wgd.pairs	Pbr.tandem.pairs	Pbr.proximal.pairs	Pbr.transposed.pairs	Pbr.dispersed.pairs
Bartlett	Pco.wgd.pairs	Pco.tandem.pairs	Pco.proximal.pairs	Pco.transposed.pairs	Pco.dispersed.pairs
Nijisseiki	Ppy.wgd.pairs	Ppy.tandem.pairs	Ppy.proximal.pairs	Ppy.transposed.pairs	Ppy.dispersed.pairs
Cuiguan	Ppc.wgd.pairs	Ppc.tandem.pairs	Ppc.proximal.pairs	Ppc.transposed.pairs	Ppc.dispersed.pairs
Duli	Pbe.wgd.pairs	Pbe.tandem.pairs	Pbe.proximal.pairs	Pbe.transposed.pairs	Pbe.dispersed.pairs
Zhongai 1	Puc.wgd.pairs	Puc.tandem.pairs	Puc.proximal.pairs	Puc.transposed.pairs	Puc.dispersed.pairs
D'Anjou	Pcd.wgd.pairs	Pcd.tandem.pairs	Pcd.proximal.pairs	Pcd.transposed.pairs	Pcd.dispersed.pairs

Reference:

Qiao, X., Li, Q., Yin, H., Qi, K., Li, L., Wang, R., Zhang, S. and Paterson, A.H. (2019) Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants. GENOME BIOL, 20, 38.